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Welcome to Ipomoea Genome Hub

The Ipomoea Genome Hub is an integrated web-based database for all the people who love Ipomoea species. The haplotype-resolved genome sequence of hexaploid Ipomoea batatas (cv. Taizhong6) is available here. The hub also provides tools for easy sharing of research data and ideas.

With a global annual production of more than 100 million tons from 1965 to 2014, Ipomoea batatas, a great contributor to food security, is an important source of calories, proteins, vitamins and minerals for humans. It is the seventh most important crop of the world and the fourth most significant in China, in terms of the annual production.

Ipomoea batatas is a hexaploid species (2n = 6x = 90) with a base chromosome number of 15. The hexaploid genome size is about 4.4 Gb estimated by C-value. The most possible genome constitution is predicted as B1B1B2B2B2B2 by genetic linkages studies and confirmed by current genome sequence.

News
  • 20191020: Check photos during 2019ICM!| Day1| Day2
  • 20190905: We are glad to share with you the new version of sweet potato genome. Enjoy your reseach!
  • 20190708: You are invited to submit Abstract/Poster to ICMI.
  • 20180504: There are 1090 records from SRA database have been incorporated in current database. Check your own contributions and contact us to report bugs. Caution: some huge dataset may take time to wait for sever upgrade.
  • 20171012: You are invited to submit abstract/manuscript to this Research Topic.
  • 20170821: Tracing the evolutionary history of the sweet potato.| Article | Comment
  • 20170711: Genome paper has now been accepted for publication in Nature Plants.
  • 20170606: Genome paper has been accepted in principle.
  • 20170416: Revised article is sent back to Nature Plants.
  • 20161017: Major revision decision on Nature Plants submission.
  • 20160902: Genome article is sent out for review by Nature Plants.
  • 20160826: Genome article is tranfered to Nature Plants.
  • 20160718: Genome article is posted in bioRxiv.
  • 20160607: Rebuttal letter is sent back to Nature Communications.
  • 20160527: Genome article is rejected by Nature Communications.
  • 20160121: Genome article is sent out for review by Nature Communications.
  • 20160111: Genome letter is rejected by Nature Biotechnology.
  • 20151222: Genome article is rejected by Nature Genetics.
  • 20151215: Submitting version of sweet potato genome paper.
  • 20151208: Updated genome website http://public-genomes-ngs.molgen.mpg.de/SweetPotato/
  • 20151110: Raw data is deposited into NCBI under PRJNA301667.
  • 20151102: Oxford Nanopore reads are aviable.
  • 20151015: Oxford Nanopore burn in runs.
  • 20150921: First version of sweet potato genome paper.
  • 20150831: Version 1 genome sequence is generated after haplotyping and scaffolding ~824 Mbp.
  • 20150526: Bate version of sweet potato genome website is launched based on Version 0.
  • 20150505: Version0.3 genome sequence of sweet potato ~863 Mbp (so called Version 0).
  • 20150409: More and longer read data is added on Nextseq500 platform.
  • 20150316: Bate version of haplotying code is developed based on Version0.2.
  • 20140529: Version0.2 genome sequence of sweet potato ~650 Mbp.
  • 20140424: Version0.1 genome sequence of sweet potato ~580 Mbp.
  • 20131205: De novo transcriptome assembly in sweet potato finished.